FDA Plans New Project for Emerging Genomics Technologies
FDA is developing a new genomics project called Sequencing Quality Control Phase 2 (SEQC2) that aims to develop quality control metrics and benchmark bioinformatics approaches for analyzing whole genome sequencing and targeted gene sequencing data. The project is also designed to achieve best practices, to develop standard analysis protocols, and to apply these newer methods in regulatory settings related to next-generation sequencing (NGS), according to agency officials writing in the AAPS Journal. “The ultimate goal of SEQC2 is the development of standards for using NGS data that will provide the FDA with objective criteria and metrics for data quality assessment that can be applied in regulatory settings and to provide information for precision medicine,” they say.
In their article, the officials also examine previous work under the MicroArray Quality Control (MAQC) consortiumm which was led by the agency to analyze the technical performance and utility of emerging molecular technologies for clinical applications and safety assessments. The primary aim of these FDA-led efforts for emerging genomics technologies “is to engage the stakeholders and research community for consensus building with respect to the reliable use of genomics data with objective criteria and assessment metrics for data quality and reliability, which can be employed in the FDA for their fit-for-purpose application,” they say.